Skip to Content

Software

Packages installed on ACISS

Every compute node on ACISS runs the RedHat Enterprise Linux (RHEL) 6.6.

Most packages needed by users are handed by the Modules (see how-to here) system.

The full list of what is presently installed on ACISS is available on any node using module avail.

If you need a package or runtime installed that we do not currently have feel free to contact us about getting it installed.

Environments/Runtimes

  • Java – 1.6, 1.7, 1.8
  • Mathematica – 8, 9, 10, 10.2 (how-to)
  • Matlab – 2011b, 2012b, 2013b, 2014a, R2015b (how-to)
  • OpenMPI – 1.4, 1.5, 1.6, 1.7, 1.8 built with various compilers (how-to)
  • MPICH2 – 1.5, 3.0 built with GCC
  • Perl – 5.14, 5.16
  • Python – 2.7, 3.3
  • R – 2.15.3, 3.0.3, 3.1.3
  • Tau – 2.21
  • Valgrind – 3.6
  • CUDA 4.1, 4.2, 5.0, 5.5
  • GAMESS (how-to)
  • Gaussian09 (how-to)
  • Stata 12
  • SAS 9.2, 9.3

Compilers

  • GCC suite
    • 4.3.6
    • 4.4.7
    • 4.5.3
    • 4.6
    • 4.7
    • 4.8
    • 4.9
    • 5.1
    • 5.2
  • Intel suite
    • 12.0.4
    • 12.1.3
  • Nagware suite
    • 5.3.854
    • 6.0
  • PGI suite
    • 11.10
    • 12.10
    • 13.10
    • 14.10
    • 15.7

Libraries/Packages available through modules

  • allpathslg
  • amos
  • bedtools
  • biopython
  • blat
  • boost
  • bowtie
  • bwa
  • cdbfasta
  • cd-hit
  • clearcut
  • cmake
  • cuda
  • Cytoscape
  • dyninstAPI
  • FastTree
  • fastx_toolkit
  • fftw
  • fossil
  • fsl
  • galaxy-dist
  • Gamess (how-to)
  • gasnet-1.18.0
  • Gaussian09 (how-to)
  • gmap-gsnap
  • gmp
  • grace
  • graphviz
  • gromacs
  • gsl
  • hmpp
  • infernal
  • INFO
  • java
  • lammps
  • libdwarf-20111214
  • libgtextutils
  • MatlabMPI
  • matplotlib
  • meme
  • microbiomeutil
  • mingw64
  • mothur
  • mpc
  • mpfr
  • mpich2
  • mriconvert
  • mricron
  • msmpi
  • MUMmer
  • muscle
  • nag
  • ncbi-blast
  • numpy
  • nwchem
  • oases
  • oclJacket
  • openmpi
  • openshmem
  • papi
  • parallels
  • pdtoolkit-3.17
  • pegasus-wms
  • perl
  • price
  • PyCogent
  • PyNAST
  • Qiime
  • RAxML
  • rdp_classifier
  • Rnnotator
  • samtools
  • SOAPdenovo
  • SOAPsnpZ
  • SOAPsplice
  • stacks
  • swift
  • tagdust
  • tar
  • taverna-workbench-2.2.0
  • tophat
  • uclust
  • ucsc_utils
  • usearch
  • vampir-7.5.0
  • velvet
  • vmatch
  • vmd
  • wpp